Assessment of cross‐protection to heterologous strains of Flavobacterium psychrophilum following vaccination with a live‐attenuated coldwater disease immersion vaccine

Bacterial coldwater disease, caused by Flavobacterium psychrophilum, remains one of the most significant bacterial diseases of salmonids worldwide. A previously developed and reported live‐attenuated immersion vaccine (F. psychrophilum; B.17‐ILM) has been shown to confer significant protection to salmonids. To further characterize this vaccine, a series of experiments were carried out to determine the cross‐protective efficacy of this B.17‐ILM vaccine against 9 F. psychrophilum isolates (representing seven sequence types/three clonal complexes as determined by multilocus sequence typing) in comparison with a wild‐type virulent strain, CSF‐259‐93. To assess protection, 28‐day experimental challenges of rainbow trout (Oncorhynchus mykiss) fry were conducted following immersion vaccinations with the B.17‐ILM vaccine. F. psychrophilum strains used in challenge trials were isolated from several fish species across the globe; however, all were found to be virulent in rainbow trout. The B.17‐ILM vaccine provided significant protection against all strains, with relative percent survival values ranging from 51% to 72%. All vaccinated fish developed an adaptive immune response (as measured by F. psychrophilum‐specific antibodies) that increased out to the time of challenge (8 weeks postimmunization). Previous studies have confirmed that antibody plays an important role in protection against F. psychrophilum challenge; therefore, specific antibodies to the B.17‐ILM vaccine strain appear to contribute to the cross‐protection observed to heterologous strain. The ability of such antibodies to bind to similar antigenic regions for all strains was confirmed by western blot analyses. Results presented here support the practical application of this live‐attenuated vaccine, and suggest that it will be efficacious even in aquaculture operations affected by diverse strains of F. psychrophilum.     

Bonamia in Ostrea angasi: Diagnostic performance,field prevalence and intensity

Bonamia spp. parasites threaten flat oyster (Ostrea spp.) farming worldwide. Understanding test performance is important for designing surveillance and interpreting diagnostic results. Following a pilot survey which found low Bonamia sp. intensity in farmed Ostrea angasi, we tested further oysters (n = 100–150) from each of three farms for Bonamia sp. using heart smear, histology and qPCR. We used a Bayesian Latent Class Model to assess diagnostic sensitivity (DSe) and specificity (DSp) of these tests individually or in combination, and to assess prevalence. Histology was the best individual test (DSe 0.76, DSp 0.93) compared to quantitative polymerase chain reaction (qPCR) (DSe 0.69, DSp 0.93) and heart smear (DSe 0.61, DSp 0.60). Histology combined with qPCR and defining a positive from either test as an infected case maximized test performance (DSe 0.91, DSp 0.88). Prevalence was higher at two farms in a high‐density oyster growing region than at a farm cultivating oysters at lower density. Parasite intensities were lower than in New Zealand and European studies, and this is probably contributed to differences in the performance of test when compared to other studies. Understanding diagnostic test performance in different populations can support the development of improved Bonamia surveillance programs.     

Survival and Growth of Isolated Polyps of Galaxea fascicularis (Linnaeus 1767) on Six Kinds of Culture Substrates: Implications for Mariculture,Aquarium Culture,and Conservation

Coral aquaculture is viewed as a sustainable method of providing colonies for use in the aquarium trade, pharmacological studies, and coral reef rehabilitation. The production of large, healthy specimens depends on providing conditions that mimic or surpass natural reef environments. Materials with a high degree of variability in physical and chemical properties are utilized as substrates in coral aquaculture, but until fragment–substrate interactions are isolated and independently studied, the possible inhibitory and facilitative effects of each material will remain unclear. To understand potential key roles that substrates can play in coral culture, a comparison was made about the role of various materials on fragment survival and growth. The experiment examined the interactions between isolates of a common scleractinian coral, Galaxea fascicularis, and six commonly used substrates (coral rock, terracotta, polyvinyl chloride, steel, rubber tire, and concrete) and how these affected survival and growth. No differences were observed in the survival, colony size, and polyp production of the resulting microcolonies. The results show that, for G. fascicularis, growth is not affected by substrate type. The results demonstrate the use of a wide variety of materials for the successful aquaculture of scleractinian corals.     

Radioisotope and stable isotope ratios (Δ14C, δ15N) suggest larval lamprey growth is dependent on both fresh and aged organic matter in streams

Lampreys have a complex life cycle which includes a multi‐year infaunal larval stage (ammocoete). Gut content analysis has generally identified detritus (i.e., unidentifiable organic matter) as the major dietary component to ammocoetes, though algae can also be important. However, gut content preserves only a snapshot of the animal's diet and does not reflect assimilated material. In order to better characterise the nutritional sources supporting ammocoete growth, we analysed ammocoete body tissue and potential dietary sources at two streams using natural Δ¹⁴C and δ¹⁵N to estimate time‐integrated nutritional support. Bayesian isotope mixing models revealed differences in the importance of sources supporting ammocoetes between sites. Ammocoetes from a stream in a mixed land usage area (~50% agriculture, ~40% forest and ~10% developed) were primarily supported (mean: ~50%) by fresh terrestrial organic matter but were also supported by substantial contributions (mean: ~30%) by aged organic matter (AOM) and autochthonous material (algae; mean ~20%). In a predominantly forested (~90%) headwater stream, different modelling scenarios (uninformed or informed priors) suggested that algal support of ammocoete nutrition ranged from 7% to 45%. However, the model relying on informed priors developed from gut content analysis produced the low estimates, suggesting these were more reliable. When algae were a minor component of the nutrition at the forested site, ammocoetes were highly dependent on AOM (83 ± 26%; mean ± SD). Based on these findings, ammocoete growth and development are predicted to be strongly influenced by both land use and the availability of allochthonous and autochthonous materials of varying ages within streams.     

Habitat configuration for an obligate shallow‐water delphinid: The Indo‐Pacific humpback dolphin,Sousa chinensis,in the Beibu Gulf (Gulf of Tonkin)

1. Habitat configuration is an important baseline to delineate protected area design, refine impact mitigation measures and define habitat protection plans for threatened species. For coastal delphinids, outlining their habitat configuration becomes a real challenge when faced with large distribution ranges that straddle international borders, leaving broad information gaps in uninvestigated areas.
2. This study projected likely habitats of Indo‐Pacific humpback dolphins, Sousa chinensis, in the Beibu Gulf (Gulf of Tonkin) based on occurrence data and remotely sensed oceanographic characteristics. Net primary productivity was derived to measure the ecosystem service of humpback dolphin habitats.
3. Bathymetry and chlorophyll‐a concentration are major variables contributing to humpback dolphin habitat configuration, which is characterized by shallow water depth and high primary productivity. Three major, likely habitats were identified in the northern Beibu Gulf from western Leizhou Peninsula to the China–Vietnam border, western Gulf of Tonkin from the Red River estuary to the central coast of Vietnam, and south‐western Hainan Island. Less than 9% of likely habitats are currently protected by marine protected areas.
4. Affinity to high primary productivity and shallow depths implies that prey abundance and foraging efficiency influence habitat selection by Indo‐Pacific humpback dolphins. Anthropogenic activities potentially altering oceanographic characteristics may impact regional marine ecosystem functions, and hence habitat configuration.
5. Habitat protection actions for Indo‐Pacific humpback dolphins include implementing coordinated and systematic surveys in major habitats, associating core habitat protection with protected area networks and maritime function zoning, ensuring ecosystem function integrity within major habitats, and reducing both explicit lethal impacts and implicit anthropogenic impacts from activities that change oceanographic features. The habitat protection plan should not only consider marine habitats, but also adjacent coastal landscapes and river catchments. This requires coordination, collaboration and information sharing between scientific research teams, government policy representatives, non‐governmental organizations, local communities and other interested stakeholders.

     

Climate‐induced vulnerability of fisheries in the Coral Triangle: Skipjack Tuna thermal spawning habitats

We investigated projected changes in sea surface temperature (SST) and the associated impacts on spawning habitat for skipjack tuna (Katsuwonus pelamis) in the Coral Triangle region (CT). A multimodel aggregate of SST CMIP5 models for the CT region, based on a comprehensive skill validation assessment, was used to identify the five best performing of 36 models tested for inclusion in a regional multimodel ensemble. Monthly 1° SST multimodel aggregate projections for the CT region under RCP8.5 show that increases in SST, as high as 2.8°C (mean value), will likely occur by the end of this century. Using these estimates of SST change, we applied three parameterizations of skipjack tuna spawning temperatures to assess the potential for change in spawning habitat within the CT region. The three spawning temperature parameterizations were as follows: (a) a square‐wave function derived from catch data with boundaries at 26 and 30°C; (b) a symmetric Gaussian function derived from the SEAPODYM models; and (c) an asymmetric Gaussian function that modifies the SEAPODYM curve in (b) to include the results of relevant physiological experiments. All three parameterizations show similar geographic patterns, with the amount of favourable spawning habitat decreasing throughout the central, equatorial CT region and increasing at higher latitudes. However, the three parameterizations show marked differences in the modelled magnitude of change, with an asymmetric Gaussian function (ASGF) showing a regionwide average of 66.1% decline in favourable spawning habitat between 2015 and 2099. These projected changes in tuna spawning habitats are likely to have important consequences on local and regional fisheries management in the CT region.